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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9579 and 9580 are separated by 640 nucleotides
9580 and 9581 are separated by 396 nucleotides
9581 and 9582 are separated by 271 nucleotides
9582 and 9583 are separated by 348 nucleotides
mRNA_1211: 9579 - K15078 SLX1 structure-specific endonuclease subunit SLX1, at 660,116 to 662,467
9579
mRNA_1212: 9580 - HMMPfam-Regulator of G protein signaling domain-PF00615,ProSiteProfiles-RGS domain profile.-PS50132,SMART-Regulator of G protein signalling domain-SM00315,SUPERFAMILY--SSF48097, at 663,108 to 664,692
9580
mRNA_1213: 9581 - KOG1205 Predicted dehydrogenase, at 665,089 to 665,972
9581
mRNA_1214: 9582 - Hypothetical Protein, at 666,244 to 666,423
9582
mRNA_1215: 9583 - Hypothetical Protein, at 666,772 to 668,801
9583
Group
Condition
mRNA
_1211
mRNA
_1212
mRNA
_1213
mRNA
_1214
mRNA
_1215
9579
9580
9581
9582
9583
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
-0.6
-0.9
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.2
-1.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
N.D.
-0.1
-0.4
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
+0.3
-1.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
-0.2
+0.8
-1.2
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.0
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.5
N.D.
-0.2
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-0.4
-0.3
+1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
-0.0
+0.7
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
+0.0
+0.7
+0.1
auxotrophy
YNB Glucose
+0.9
N.D.
+0.3
+0.6
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.5
+1.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
-0.3
+0.3
+1.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
-0.1
+1.1
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.3
+1.5
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
N.D.
-0.5
+1.4
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.3
+0.3
+1.6
auxotrophy
Dropout Complete
+1.2
N.D.
+0.7
+0.2
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.9
N.D.
+0.9
+0.8
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.6
N.D.
+1.3
+0.3
+0.8
growth on ypd
YPD
-0.1
N.D.
+1.7
-1.2
+2.6
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