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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9580 and 9581 are separated by 396 nucleotides
9581 and 9582 are separated by 271 nucleotides
9582 and 9583 are separated by 348 nucleotides
9583 and 9584 are separated by 1161 nucleotides
mRNA_1212: 9580 - HMMPfam-Regulator of G protein signaling domain-PF00615,ProSiteProfiles-RGS domain profile.-PS50132,SMART-Regulator of G protein signalling domain-SM00315,SUPERFAMILY--SSF48097, at 663,108 to 664,692
9580
mRNA_1213: 9581 - KOG1205 Predicted dehydrogenase, at 665,089 to 665,972
9581
mRNA_1214: 9582 - Hypothetical Protein, at 666,244 to 666,423
9582
mRNA_1215: 9583 - Hypothetical Protein, at 666,772 to 668,801
9583
mRNA_1216: 9584 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 669,963 to 671,497
9584
Group
Condition
mRNA
_1212
mRNA
_1213
mRNA
_1214
mRNA
_1215
mRNA
_1216
9580
9581
9582
9583
9584
growth on oleic acid
YNB Oleic Acid
N.D.
-0.6
-0.9
-0.4
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-1.2
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.4
-0.5
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-1.1
+0.5
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.1
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.8
-1.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.2
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
-0.3
+1.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.7
+0.1
-0.5
auxotrophy
YNB Glucose
N.D.
+0.3
+0.6
-0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
+0.7
+0.3
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.5
+1.1
+0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
+0.3
+1.3
-0.1
auxotrophy
Dropout Complete
N.D.
+0.7
+0.2
+0.5
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.3
+1.6
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
+1.5
+0.6
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
+1.4
+0.6
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.9
+0.8
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+1.1
+1.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+1.3
+0.3
+0.8
-0.1
growth on ypd
YPD
N.D.
+1.7
-1.2
+2.6
-0.0
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