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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9582 and 9583 are separated by 348 nucleotides
9583 and 9584 are separated by 1161 nucleotides
9584 and 9585 are separated by 508 nucleotides
9585 and 9586 are separated by 503 nucleotides
mRNA_1214: 9582 - Hypothetical Protein, at 666,244 to 666,423
9582
mRNA_1215: 9583 - Hypothetical Protein, at 666,772 to 668,801
9583
mRNA_1216: 9584 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 669,963 to 671,497
9584
mRNA_1217: 9585 - K10580 UBE2N, BLU, UBC13 ubiquitin-conjugating enzyme E2 N, at 672,006 to 672,875
9585
mRNA_1218: 9586 - SUPERFAMILY--SSF52047, at 673,379 to 675,043
9586
Group
Condition
mRNA
_1214
mRNA
_1215
mRNA
_1216
mRNA
_1217
mRNA
_1218
9582
9583
9584
9585
9586
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+1.0
-0.4
-2.8
-1.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.5
-0.2
-2.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-1.1
+0.5
-0.3
-1.6
-0.1
growth on oleic acid
YNB Oleic Acid
-0.9
-0.4
-0.2
-0.9
+0.1
ypd buoyancy
40 hrs High Buoyancy
-1.2
-0.2
-0.3
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.1
-0.6
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+1.6
-0.5
-1.8
+0.1
growth on oleic acid
YNB Glucose
+0.1
-0.3
-0.4
+0.2
+0.4
auxotrophy
Dropout Complete
+0.2
+0.5
+0.1
-0.9
+0.1
auxotrophy
YNB Glucose
+0.6
-0.1
-0.0
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.7
+0.1
-0.5
-0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+0.3
+0.0
-0.8
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.5
+0.6
-0.1
-1.5
+0.1
growth on ricinoleic acid
YNB Glucose
+1.1
+0.1
-0.4
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.8
-0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
-1.2
+0.3
+0.4
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.8
+0.4
+0.0
-0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+1.3
-0.1
-0.6
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
+1.0
+0.2
-1.0
+0.4
growth on ypd
YPD
-1.2
+2.6
-0.0
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.4
+0.6
+0.4
-1.2
+0.5
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