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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9583 and 9584 are separated by 1161 nucleotides
9584 and 9585 are separated by 508 nucleotides
9585 and 9586 are separated by 503 nucleotides
9586 and 9587 are separated by 189 nucleotides
mRNA_1215: 9583 - Hypothetical Protein, at 666,772 to 668,801
9583
mRNA_1216: 9584 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 669,963 to 671,497
9584
mRNA_1217: 9585 - K10580 UBE2N, BLU, UBC13 ubiquitin-conjugating enzyme E2 N, at 672,006 to 672,875
9585
mRNA_1218: 9586 - SUPERFAMILY--SSF52047, at 673,379 to 675,043
9586
mRNA_1219: 9587 - KOG3202 SNARE protein TLG1/Syntaxin 6, at 675,233 to 676,117
9587
Group
Condition
mRNA
_1215
mRNA
_1216
mRNA
_1217
mRNA
_1218
mRNA
_1219
9583
9584
9585
9586
9587
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
-0.4
-2.8
-1.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.2
-2.0
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.3
-1.6
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
-0.2
-0.9
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.1
-1.5
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.6
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+1.6
-0.5
-1.8
+0.1
N.D.
auxotrophy
YNB Glucose
-0.1
-0.0
-0.3
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.4
-0.2
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.5
-0.1
+0.3
N.D.
auxotrophy
Dropout Complete
+0.5
+0.1
-0.9
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.0
-0.8
+0.3
N.D.
growth on oleic acid
YNB Glucose
-0.3
-0.4
+0.2
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.2
+0.3
+0.4
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.0
-0.4
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+0.4
-1.2
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.8
-0.1
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
+0.2
-1.0
+0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.3
-0.1
-0.6
+0.5
N.D.
growth on ypd
YPD
+2.6
-0.0
+0.1
+0.2
N.D.
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