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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9588 and 9589 are separated by 325 nucleotides
9589 and 9590 are separated by 294 nucleotides
9590 and 9591 are separated by 877 nucleotides
9591 and 9592 are separated by 201 nucleotides
mRNA_1220: 9588 - KOG0254 Predicted transporter (major facilitator superfamily), at 676,707 to 679,515
9588
mRNA_1221: 9589 - K01810 GPI, pgi glucose-6-phosphate isomerase, at 679,841 to 682,126
9589
mRNA_1222: 9590 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 682,421 to 686,506
9590
mRNA_1223: 9591 - PRINTS-Proline rich extensin signature-PR01217, at 687,384 to 689,890
9591
mRNA_1224: 9592 - BLAST catalytic [Ascochyta rabiei], at 690,092 to 691,295
9592
Group
Condition
mRNA
_1220
mRNA
_1221
mRNA
_1222
mRNA
_1223
mRNA
_1224
9588
9589
9590
9591
9592
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
-0.3
-0.7
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.2
N.D.
+0.4
-0.7
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.3
-0.8
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
+0.1
-0.4
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.2
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.1
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
-0.0
-0.5
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.1
-0.4
+0.0
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.0
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
+0.0
-0.3
-0.1
auxotrophy
YNB Glucose
-0.2
N.D.
+0.2
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
-0.0
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.1
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.1
-0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.1
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
-0.3
+0.1
auxotrophy
Dropout Complete
-0.1
N.D.
+0.0
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.3
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.2
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
-0.0
+0.4
+0.1
growth on ypd
YPD
+0.3
N.D.
+0.3
-0.1
+0.8
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