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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9593 and 9594 are separated by 421 nucleotides
9594 and 9595 are separated by 392 nucleotides
9595 and 9596 are separated by 544 nucleotides
9596 and 9597 are separated by 347 nucleotides
mRNA_1225: 9593 - KOG2195 Transferrin receptor and related proteins containing the protease-associated (PA) domain, at 691,442 to 693,362
9593
mRNA_1226: 9594 - K01262 pepP Xaa-Pro aminopeptidase, at 693,784 to 696,236
9594
mRNA_1227: 9595 - KOG1318 Helix loop helix transcription factor EB, at 696,629 to 699,042
9595
mRNA_1228: 9596 - K00693 GYS glycogen synthase, at 699,587 to 703,104
9596
mRNA_1229: 9597 - SUPERFAMILY--SSF52047, at 703,452 to 704,884
9597
Group
Condition
mRNA
_1225
mRNA
_1226
mRNA
_1227
mRNA
_1228
mRNA
_1229
9593
9594
9595
9596
9597
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.0
+0.3
-3.9
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
+0.5
-2.8
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.1
+0.2
-1.7
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
-0.4
-0.0
-1.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.2
-0.1
-1.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.2
-0.8
+0.3
+0.0
growth on ricinoleic acid
YNB Glucose
-0.4
-0.6
-0.3
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.0
+0.1
-0.6
-0.0
auxotrophy
YNB Glucose
-0.2
-0.5
-0.7
+0.5
+0.1
auxotrophy
Dropout Complete
-0.2
-0.4
-0.8
+0.6
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.2
+0.5
-0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.2
-0.5
-0.1
+0.2
growth on oleic acid
YNB Glucose
-0.2
-0.5
-0.2
+0.6
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.7
+0.2
+0.1
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
-0.3
+0.4
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
+0.6
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.0
+0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.6
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
+0.3
-0.3
+0.1
growth on ypd
YPD
+0.5
-0.0
+0.6
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.0
+0.4
+0.2
-0.0
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