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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9602 and 9603 are separated by 562 nucleotides
9603 and 9604 are separated by 491 nucleotides
9604 and 9605 are separated by 271 nucleotides
9605 and 9606 are separated by 624 nucleotides
mRNA_1234: 9602 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 714,659 to 715,622
9602
mRNA_1235: 9603 - K12818 DHX8, PRP22 ATP-dependent RNA helicase DHX8/PRP22, at 716,185 to 721,769
9603
mRNA_1236: 9604 - K02377 TSTA3, fcl GDP-L-fucose synthase, at 722,261 to 724,161
9604
mRNA_1237: 9605 - SUPERFAMILY--SSF52047, at 724,433 to 725,551
9605
mRNA_1238: 9606 - SUPERFAMILY--SSF52047, at 726,176 to 728,961
9606
Group
Condition
mRNA
_1234
mRNA
_1235
mRNA
_1236
mRNA
_1237
mRNA
_1238
9602
9603
9604
9605
9606
growth on ricinoleic acid
YNB Glucose
-0.8
-0.3
N.D.
-0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.0
N.D.
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
N.D.
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
N.D.
-0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.0
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.2
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.1
N.D.
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-0.3
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose
-0.2
+0.7
N.D.
-0.3
-0.1
growth on ypd
YPD
+0.0
+0.3
N.D.
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.4
N.D.
+0.1
+0.1
auxotrophy
Dropout Complete
-0.0
+0.6
N.D.
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
N.D.
-0.2
-0.1
growth on oleic acid
YNB Glucose
+0.4
+0.5
N.D.
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.5
N.D.
+0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.2
N.D.
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.4
N.D.
-0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.2
N.D.
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+0.5
N.D.
-0.0
+0.0
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