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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9604 and 9605 are separated by 271 nucleotides
9605 and 9606 are separated by 624 nucleotides
9606 and 9607 are separated by 452 nucleotides
9607 and 9608 are separated by 376 nucleotides
mRNA_1236: 9604 - K02377 TSTA3, fcl GDP-L-fucose synthase, at 722,261 to 724,161
9604
mRNA_1237: 9605 - SUPERFAMILY--SSF52047, at 724,433 to 725,551
9605
mRNA_1238: 9606 - SUPERFAMILY--SSF52047, at 726,176 to 728,961
9606
mRNA_1239: 9607 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 729,414 to 732,263
9607
mRNA_1240: 9608 - Interpro Protein of unknown function (DUF1275) 0, at 732,640 to 733,855
9608
Group
Condition
mRNA
_1236
mRNA
_1237
mRNA
_1238
mRNA
_1239
mRNA
_1240
9604
9605
9606
9607
9608
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-0.1
-0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.3
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
-0.0
-0.2
-0.6
auxotrophy
Dropout Complete
N.D.
-0.3
-0.1
-0.1
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.4
-0.1
-0.4
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.1
-0.1
-0.5
growth on ypd
YPD
N.D.
-0.2
+0.0
-0.3
-0.0
auxotrophy
YNB Glucose
N.D.
-0.3
-0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.1
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.0
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.1
-0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-0.1
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.1
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-0.1
-0.4
+0.5
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
+0.1
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.0
-0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
+0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.0
+0.2
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.2
-0.2
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
-0.2
+0.3
+0.3
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