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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9605 and 9606 are separated by 624 nucleotides
9606 and 9607 are separated by 452 nucleotides
9607 and 9608 are separated by 376 nucleotides
9608 and 9609 are separated by 516 nucleotides
mRNA_1237: 9605 - SUPERFAMILY--SSF52047, at 724,433 to 725,551
9605
mRNA_1238: 9606 - SUPERFAMILY--SSF52047, at 726,176 to 728,961
9606
mRNA_1239: 9607 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 729,414 to 732,263
9607
mRNA_1240: 9608 - Interpro Protein of unknown function (DUF1275) 0, at 732,640 to 733,855
9608
mRNA_1241: 9609 - K12893 SFRS4_5_6 splicing factor, arginine/serine-rich 4/5/6, at 734,372 to 735,961
9609
Group
Condition
mRNA
_1237
mRNA
_1238
mRNA
_1239
mRNA
_1240
mRNA
_1241
9605
9606
9607
9608
9609
auxotrophy
Dropout Complete
-0.3
-0.1
-0.1
-0.2
-1.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
+0.1
-0.3
-1.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.1
-0.1
-0.3
-0.6
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
+0.0
+0.1
-1.1
auxotrophy
YNB Glucose
-0.3
-0.1
+0.1
-0.2
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
-0.4
+0.5
-1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
-0.2
-0.6
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.3
-0.5
-0.2
-0.4
growth on oleic acid
YNB Glucose
-0.4
-0.1
-0.4
+0.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.2
+0.4
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
-0.2
+0.7
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
-0.3
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.1
-0.5
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
+0.3
+0.3
-0.5
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
-0.0
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.3
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
-0.1
+0.2
-0.1
growth on ypd
YPD
-0.2
+0.0
-0.3
-0.0
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.2
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.0
+0.2
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.0
-0.0
-0.1
+0.3
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