Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
9607 and 9608 are separated by 376 nucleotides
9608 and 9609 are separated by 516 nucleotides
9609 and 9610 are separated by 229 nucleotides
9610 and 9611 are separated by 106 nucleotides
mRNA_1239: 9607 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 729,414 to 732,263
9607
mRNA_1240: 9608 - Interpro Protein of unknown function (DUF1275) 0, at 732,640 to 733,855
9608
mRNA_1241: 9609 - K12893 SFRS4_5_6 splicing factor, arginine/serine-rich 4/5/6, at 734,372 to 735,961
9609
mRNA_1242: 9610 - K01110 PTEN phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, at 736,191 to 738,180
9610
mRNA_1243: 9611 - K02493 hemK, prmC, HEMK release factor glutamine methyltransferase, at 738,287 to 739,305
9611
Group
Condition
mRNA
_1239
mRNA
_1240
mRNA
_1241
mRNA
_1242
mRNA
_1243
9607
9608
9609
9610
9611
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.2
-0.4
-0.2
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.5
-1.2
-0.0
-0.2
auxotrophy
Dropout Complete
-0.1
-0.2
-1.0
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.6
-0.6
-0.2
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
-1.1
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.5
+0.2
+0.2
-0.5
auxotrophy
YNB Glucose
+0.1
-0.2
-0.8
-0.0
+0.7
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
-1.1
+0.1
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
-0.3
-0.2
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
+0.1
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
-0.1
-0.4
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
-0.6
-0.1
+1.0
growth on oleic acid
YNB Glucose
-0.4
+0.3
-0.4
+0.2
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.7
-0.7
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.1
+0.3
-0.3
+0.4
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-0.1
+0.2
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.3
-0.5
+0.5
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.4
-0.3
+0.0
+0.8
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
+0.4
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.4
+0.2
-0.1
+1.1
growth on ypd
YPD
-0.3
-0.0
+0.5
+0.6
+0.5
remove
mRNA_1239
plot
remove
mRNA_1240
plot
remove
mRNA_1241
remove
mRNA_1242
plot
remove
mRNA_1243
plot