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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9612 and 9613 are separated by 401 nucleotides
9613 and 9614 are separated by 52 nucleotides
9614 and 9615 are separated by 451 nucleotides
9615 and 9616 are separated by 209 nucleotides
mRNA_1244: 9612 - SUPERFAMILY--SSF52047, at 739,687 to 741,319
9612
mRNA_1245: 9613 - HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481, at 741,721 to 743,435
9613
mRNA_1246: 9614 - SUPERFAMILY--SSF52047, at 743,488 to 744,876
9614
mRNA_1247: 9615 - Hypothetical Protein, at 745,328 to 746,839
9615
mRNA_1248: 9616 - KOG1289 Amino acid transporters, at 747,049 to 750,301
9616
Group
Condition
mRNA
_1244
mRNA
_1245
mRNA
_1246
mRNA
_1247
mRNA
_1248
9612
9613
9614
9615
9616
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-4.4
-1.1
+0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-1.9
+0.1
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-1.3
-0.5
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
-0.4
-0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.5
+0.1
+0.0
+0.0
growth on ypd
YPD
+0.2
-0.1
-0.5
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.4
-0.0
-0.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
-0.9
+0.3
+0.2
+0.0
growth on oleic acid
YNB Glucose
+0.2
-0.4
+0.1
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.5
+0.2
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
+0.2
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.3
+0.0
+0.2
auxotrophy
YNB Glucose
+0.2
-0.7
+0.4
+0.5
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
+0.0
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.9
+0.8
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+1.1
-0.4
-0.3
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.9
-0.7
-0.0
+0.4
auxotrophy
Dropout Complete
+0.0
+0.1
+0.7
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
+0.4
-0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.3
+1.0
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.3
+0.5
+0.4
+0.2
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