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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9616 and 9617 are separated by 526 nucleotides
9617 and 9618 are separated by 1279 nucleotides
9618 and 9619 are separated by 264 nucleotides
9619 and 9620 are separated by 239 nucleotides
mRNA_1248: 9616 - KOG1289 Amino acid transporters, at 747,049 to 750,301
9616
mRNA_1249: 9617 - Hypothetical Protein, at 750,828 to 752,844
9617
mRNA_1250: 9618 - Hypothetical Protein, at 754,124 to 756,266
9618
mRNA_1251: 9619 - HMMPfam-Protein of unknown function (DUF2611)-PF11022, at 756,531 to 757,355
9619
mRNA_1252: 9620 - BLAST glycosyltransferase family 22 protein [Mixia osmu..., at 757,595 to 759,040
9620
Group
Condition
mRNA
_1248
mRNA
_1249
mRNA
_1250
mRNA
_1251
mRNA
_1252
9616
9617
9618
9619
9620
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.2
-2.2
-0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
-1.4
-0.7
+0.3
growth on ricinoleic acid
YNB Glucose
+0.0
-0.3
-0.9
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
-1.0
-0.3
+0.0
auxotrophy
YNB Glucose
+0.0
-0.1
-1.1
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.3
-1.7
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
-1.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
-1.3
-0.3
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.7
+0.2
+0.2
growth on ypd
YPD
-0.1
-0.1
-0.2
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.0
-0.8
-0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.0
-0.5
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
-0.6
+0.0
+0.0
growth on oleic acid
YNB Glucose
+0.1
-0.3
-0.1
-0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
+0.1
+0.2
-0.1
auxotrophy
Dropout Complete
+0.1
+0.1
-0.6
+0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.2
-0.1
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
+0.5
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.2
+0.6
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.2
+1.2
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+0.7
+0.5
+0.2
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