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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9617 and 9618 are separated by 1279 nucleotides
9618 and 9619 are separated by 264 nucleotides
9619 and 9620 are separated by 239 nucleotides
9620 and 9621 are separated by 399 nucleotides
mRNA_1249: 9617 - Hypothetical Protein, at 750,828 to 752,844
9617
mRNA_1250: 9618 - Hypothetical Protein, at 754,124 to 756,266
9618
mRNA_1251: 9619 - HMMPfam-Protein of unknown function (DUF2611)-PF11022, at 756,531 to 757,355
9619
mRNA_1252: 9620 - BLAST glycosyltransferase family 22 protein [Mixia osmu..., at 757,595 to 759,040
9620
mRNA_1253: 9621 - K04554 UBE2J2, NCUBE2, UBC6 ubiquitin-conjugating enzyme E2 J2, at 759,440 to 760,414
9621
Group
Condition
mRNA
_1249
mRNA
_1250
mRNA
_1251
mRNA
_1252
mRNA
_1253
9617
9618
9619
9620
9621
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-2.2
-0.4
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.5
-0.1
-0.2
-1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-1.4
-0.7
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-1.7
-0.1
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.3
-0.9
-0.5
+0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.8
-0.1
+0.3
-0.1
auxotrophy
YNB Glucose
-0.1
-1.1
-0.2
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-1.0
-0.3
+0.0
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-1.3
-0.3
+0.3
+1.0
growth on ypd
YPD
-0.1
-0.2
+0.1
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.6
+0.0
+0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
+0.2
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.7
+0.2
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-1.2
+0.1
+0.1
+1.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
+0.1
+0.3
+0.1
auxotrophy
Dropout Complete
+0.1
-0.6
+0.4
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.3
-0.1
-0.0
+0.2
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.5
+0.1
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+1.2
-0.2
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.6
-0.1
+0.2
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.7
+0.5
+0.2
+1.5
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