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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9625 and 9626 are separated by 130 nucleotides
9626 and 9627 are separated by 425 nucleotides
9627 and 9628 are separated by 201 nucleotides
9628 and 9629 are separated by 1370 nucleotides
mRNA_1257: 9625 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 768,823 to 770,242
9625
mRNA_1258: 9626 - Hypothetical Protein, at 770,373 to 771,317
9626
mRNA_1259: 9627 - K10887 DCLRE1C, ARTEMIS, SCIDA DNA cross-link repair 1C protein, at 771,743 to 774,831
9627
mRNA_1260: 9628 - Hypothetical Protein, at 775,033 to 777,519
9628
mRNA_1261: 9629 - K04712 DEGS sphingolipid Delta-4 desaturase, at 778,890 to 780,707
9629
Group
Condition
mRNA
_1257
mRNA
_1258
mRNA
_1259
mRNA
_1260
mRNA
_1261
9625
9626
9627
9628
9629
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
N.D.
+0.3
+0.9
-4.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
+0.3
+0.8
-3.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
N.D.
+0.1
-0.9
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
-0.2
-0.7
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
+0.1
+0.5
-1.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.0
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.2
+0.6
-0.8
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
+0.2
+0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
+0.4
+0.9
-0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
+0.2
+0.3
+0.1
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.3
+0.8
-0.5
auxotrophy
YNB Glucose
+0.1
N.D.
+0.4
+0.9
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
+0.4
+0.8
-0.0
growth on ypd
YPD
-0.2
N.D.
+0.1
+0.4
+1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.1
+0.6
+1.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.2
+0.8
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.3
+0.5
+1.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
+0.4
+1.1
+1.2
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.4
+1.4
+1.2
auxotrophy
Dropout Complete
-0.0
N.D.
+0.4
+1.0
+1.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.4
+1.0
+1.9
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