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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9627 and 9628 are separated by 201 nucleotides
9628 and 9629 are separated by 1370 nucleotides
9629 and 9630 are separated by 254 nucleotides
9630 and 9631 are separated by 166 nucleotides
mRNA_1259: 9627 - K10887 DCLRE1C, ARTEMIS, SCIDA DNA cross-link repair 1C protein, at 771,743 to 774,831
9627
mRNA_1260: 9628 - Hypothetical Protein, at 775,033 to 777,519
9628
mRNA_1261: 9629 - K04712 DEGS sphingolipid Delta-4 desaturase, at 778,890 to 780,707
9629
mRNA_1262: 9630 - KOG4781 Uncharacterized conserved protein, at 780,962 to 782,100
9630
mRNA_1263: 9631 - K06130 LYPLA2 lysophospholipase II, at 782,267 to 783,226
9631
Group
Condition
mRNA
_1259
mRNA
_1260
mRNA
_1261
mRNA
_1262
mRNA
_1263
9627
9628
9629
9630
9631
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.9
-4.3
-0.2
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.8
-3.1
-0.4
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.5
-1.0
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.9
-0.2
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.7
+0.4
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.6
-0.8
+0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.9
-0.8
-0.5
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.3
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
+0.1
+0.1
+0.4
growth on oleic acid
YNB Glucose
+0.3
+0.8
-0.5
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.3
+0.1
+0.1
+0.5
growth on ypd
YPD
+0.1
+0.4
+1.1
+0.2
-0.7
auxotrophy
YNB Glucose
+0.4
+0.9
-0.1
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.8
-0.0
-0.3
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.8
+0.6
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.6
+1.0
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+1.1
+1.2
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
+0.4
+1.4
+1.2
-0.2
-0.0
auxotrophy
Dropout Complete
+0.4
+1.0
+1.9
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.5
+1.6
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+1.0
+1.9
+0.5
+0.1
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