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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9631 and 9632 are separated by 471 nucleotides
9632 and 9633 are separated by 83 nucleotides
9633 and 9634 are separated by 224 nucleotides
9634 and 9635 are separated by 502 nucleotides
mRNA_1263: 9631 - K06130 LYPLA2 lysophospholipase II, at 782,267 to 783,226
9631
mRNA_1264: 9632 - HMMPfam-Mitochondrial ribosomal protein subunit L20-PF12824, at 783,698 to 784,459
9632
mRNA_1265: 9633 - K14861 URB1 nucleolar pre-ribosomal-associated protein 1, at 784,543 to 790,877
9633
mRNA_1266: 9634 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 791,102 to 792,635
9634
mRNA_1267: 9635 - K00814 GPT, ALT alanine transaminase, at 793,138 to 795,041
9635
Group
Condition
mRNA
_1263
mRNA
_1264
mRNA
_1265
mRNA
_1266
mRNA
_1267
9631
9632
9633
9634
9635
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.5
-1.3
-0.7
-5.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.4
-0.9
-1.1
-3.6
growth on oleic acid
YNB Oleic Acid
-0.0
+0.0
-0.9
-1.1
-3.0
growth on ricinoleic acid
YNB Glucose
-0.2
+0.5
-0.8
-1.2
-3.0
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.1
-2.0
-0.3
-3.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
-2.3
+0.1
-2.3
auxotrophy
YNB Glucose
+0.2
+0.2
-1.3
-0.1
-2.9
growth on oleic acid
YNB Glucose
+0.2
+0.1
-0.6
-0.7
-3.0
auxotrophy
Dropout Complete
+0.0
-0.2
-1.2
-1.0
-0.7
growth on ypd
YPD
-0.7
+0.4
-0.7
+0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.4
+0.3
+0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.2
+0.1
-0.0
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.1
+0.6
+0.5
-1.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
+0.7
+0.0
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.1
+0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.2
+0.4
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
+0.1
+1.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.4
+0.2
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.3
+0.3
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.8
+0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.5
-0.5
+0.7
+0.1
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