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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9632 and 9633 are separated by 83 nucleotides
9633 and 9634 are separated by 224 nucleotides
9634 and 9635 are separated by 502 nucleotides
9635 and 9636 are separated by 364 nucleotides
mRNA_1264: 9632 - HMMPfam-Mitochondrial ribosomal protein subunit L20-PF12824, at 783,698 to 784,459
9632
mRNA_1265: 9633 - K14861 URB1 nucleolar pre-ribosomal-associated protein 1, at 784,543 to 790,877
9633
mRNA_1266: 9634 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 791,102 to 792,635
9634
mRNA_1267: 9635 - K00814 GPT, ALT alanine transaminase, at 793,138 to 795,041
9635
mRNA_1268: 9636 - K03790 rimJ ribosomal-protein-alanine N-acetyltransferase, at 795,406 to 796,307
9636
Group
Condition
mRNA
_1264
mRNA
_1265
mRNA
_1266
mRNA
_1267
mRNA
_1268
9632
9633
9634
9635
9636
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-1.3
-0.7
-5.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-2.0
-0.3
-3.1
-0.0
growth on oleic acid
YNB Oleic Acid
+0.0
-0.9
-1.1
-3.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.9
-1.1
-3.6
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-2.3
+0.1
-2.3
+0.2
growth on ricinoleic acid
YNB Glucose
+0.5
-0.8
-1.2
-3.0
+0.3
growth on oleic acid
YNB Glucose
+0.1
-0.6
-0.7
-3.0
+0.0
auxotrophy
YNB Glucose
+0.2
-1.3
-0.1
-2.9
+0.2
auxotrophy
Dropout Complete
-0.2
-1.2
-1.0
-0.7
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.6
+0.5
-1.9
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
-0.0
-1.3
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.3
+0.1
-0.6
-0.0
growth on ypd
YPD
+0.4
-0.7
+0.3
-0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.5
+0.7
+0.1
-0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.4
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.3
+0.2
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.7
+0.0
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
+0.3
-0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.2
+0.2
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
+1.1
-0.5
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.8
+0.3
-0.3
+0.3
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