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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9634 and 9635 are separated by 502 nucleotides
9635 and 9636 are separated by 364 nucleotides
9636 and 9637 are separated by 261 nucleotides
9637 and 9638 are separated by 702 nucleotides
mRNA_1266: 9634 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 791,102 to 792,635
9634
mRNA_1267: 9635 - K00814 GPT, ALT alanine transaminase, at 793,138 to 795,041
9635
mRNA_1268: 9636 - K03790 rimJ ribosomal-protein-alanine N-acetyltransferase, at 795,406 to 796,307
9636
mRNA_1269: 9637 - K15628 PXA ATP-binding cassette, subfamily D (ALD), peroxisomal long-chain fatty acid import protein, at 796,569 to 799,890
9637
mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800,593 to 802,936
9638
Group
Condition
mRNA
_1266
mRNA
_1267
mRNA
_1268
mRNA
_1269
mRNA
_1270
9634
9635
9636
9637
9638
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-5.0
-0.2
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
-1.1
-3.0
-0.4
-1.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
-3.6
+0.1
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.7
-3.0
+0.0
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-3.1
-0.0
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-1.2
-3.0
+0.3
-0.1
+0.2
auxotrophy
YNB Glucose
-0.1
-2.9
+0.2
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-2.3
+0.2
-0.0
+0.1
auxotrophy
Dropout Complete
-1.0
-0.7
+0.1
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-1.3
+0.0
+0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-1.9
-0.2
+0.4
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.6
-0.0
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.2
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
-0.3
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.3
+0.3
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
+0.4
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
+0.2
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.5
+0.4
+0.3
+0.2
growth on ypd
YPD
+0.3
-0.3
+0.2
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.1
-0.5
+0.3
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
+0.1
-0.7
+0.4
-0.0
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