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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9636 and 9637 are separated by 261 nucleotides
9637 and 9638 are separated by 702 nucleotides
9638 and 9639 are separated by 483 nucleotides
9639 and 9640 are separated by 756 nucleotides
mRNA_1268: 9636 - K03790 rimJ ribosomal-protein-alanine N-acetyltransferase, at 795,406 to 796,307
9636
mRNA_1269: 9637 - K15628 PXA ATP-binding cassette, subfamily D (ALD), peroxisomal long-chain fatty acid import protein, at 796,569 to 799,890
9637
mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800,593 to 802,936
9638
mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803,420 to 806,888
9639
mRNA_1272: 9640 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 807,645 to 808,575
9640
Group
Condition
mRNA
_1268
mRNA
_1269
mRNA
_1270
mRNA
_1271
mRNA
_1272
9636
9637
9638
9639
9640
growth on oleic acid
YNB Oleic Acid
-0.4
-1.0
+0.0
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
-0.1
-0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
-0.0
-0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.1
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.4
-0.0
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.0
+0.1
-0.1
-0.3
auxotrophy
YNB Glucose
+0.2
-0.1
+0.0
-0.2
+0.1
growth on oleic acid
YNB Glucose
+0.0
-0.2
-0.1
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.0
+0.1
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
+0.1
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.2
-0.2
+0.0
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
+0.1
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
-0.1
+0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.1
-0.3
+0.0
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.4
+0.3
-0.1
+0.2
auxotrophy
Dropout Complete
+0.1
+0.2
+0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.0
-0.2
+0.1
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
-0.4
+0.1
+0.9
growth on ypd
YPD
+0.2
-0.0
+0.3
-0.2
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.3
-0.0
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.3
+0.2
+0.0
+0.7
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