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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9638 and 9639 are separated by 483 nucleotides
9639 and 9640 are separated by 756 nucleotides
9640 and 9641 are separated by 171 nucleotides
9641 and 9642 are separated by 205 nucleotides
mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800,593 to 802,936
9638
mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803,420 to 806,888
9639
mRNA_1272: 9640 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 807,645 to 808,575
9640
mRNA_1273: 9641 - BLAST priB [Histoplasma capsulatum H143], at 808,747 to 810,374
9641
mRNA_1274: 9642 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 810,580 to 813,182
9642
Group
Condition
mRNA
_1270
mRNA
_1271
mRNA
_1272
mRNA
_1273
mRNA
_1274
9638
9639
9640
9641
9642
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
-0.4
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.1
-0.1
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
-0.3
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
-0.4
+0.2
+0.0
auxotrophy
YNB Glucose
+0.0
-0.2
+0.1
-0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
-0.1
-0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
+0.2
-0.4
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.1
+0.2
-0.2
-0.2
auxotrophy
Dropout Complete
+0.1
+0.1
+0.3
-0.4
-0.0
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
-0.1
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.0
+0.4
-0.0
+0.1
growth on ypd
YPD
+0.3
-0.2
+0.8
-0.1
-0.4
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
+0.3
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
+0.7
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.1
+0.9
-0.5
+0.4
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.2
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
+0.6
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+0.7
+0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
+0.3
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.0
+0.7
+0.1
+0.1
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