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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9639 and 9640 are separated by 756 nucleotides
9640 and 9641 are separated by 171 nucleotides
9641 and 9642 are separated by 205 nucleotides
9642 and 9643 are separated by 311 nucleotides
mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803,420 to 806,888
9639
mRNA_1272: 9640 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 807,645 to 808,575
9640
mRNA_1273: 9641 - BLAST priB [Histoplasma capsulatum H143], at 808,747 to 810,374
9641
mRNA_1274: 9642 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 810,580 to 813,182
9642
mRNA_1275: 9643 - K11426 SMYD SET and MYND domain-containing protein, at 813,494 to 815,725
9643
Group
Condition
mRNA
_1271
mRNA
_1272
mRNA
_1273
mRNA
_1274
mRNA
_1275
9639
9640
9641
9642
9643
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
-0.5
+0.0
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.4
-0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
-0.3
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.4
+0.2
+0.0
-0.0
auxotrophy
YNB Glucose
-0.2
+0.1
-0.3
+0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
-0.2
-0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
-0.2
-0.2
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.3
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.2
-0.4
-0.0
+0.1
growth on ypd
YPD
-0.2
+0.8
-0.1
-0.4
-0.1
auxotrophy
Dropout Complete
+0.1
+0.3
-0.4
-0.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.1
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
+0.0
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.7
-0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.4
-0.0
+0.1
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.2
+0.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.9
-0.5
+0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
+0.3
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.6
+0.1
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.7
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.7
+0.1
+0.2
+0.1
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