Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
9640 and 9641 are separated by 171 nucleotides
9641 and 9642 are separated by 205 nucleotides
9642 and 9643 are separated by 311 nucleotides
9643 and 9644 are separated by 172 nucleotides
mRNA_1272: 9640 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 807,645 to 808,575
9640
mRNA_1273: 9641 - BLAST priB [Histoplasma capsulatum H143], at 808,747 to 810,374
9641
mRNA_1274: 9642 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 810,580 to 813,182
9642
mRNA_1275: 9643 - K11426 SMYD SET and MYND domain-containing protein, at 813,494 to 815,725
9643
mRNA_1276: 9644 - K01070 frmB, ESD, fghA S-formylglutathione hydrolase, at 815,898 to 817,599
9644
Group
Condition
mRNA
_1272
mRNA
_1273
mRNA
_1274
mRNA
_1275
mRNA
_1276
9640
9641
9642
9643
9644
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.5
+0.0
-0.5
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.1
-0.1
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.3
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.2
+0.0
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.4
-0.0
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
+0.2
+0.0
-0.0
auxotrophy
Dropout Complete
+0.3
-0.4
-0.0
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.2
-0.1
+0.1
auxotrophy
YNB Glucose
+0.1
-0.3
+0.1
-0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
-0.0
+0.1
+0.5
growth on oleic acid
YNB Oleic Acid
+0.3
+0.0
-0.1
+0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.3
+0.2
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.2
-0.2
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.0
+0.1
+0.1
-0.0
growth on ypd
YPD
+0.8
-0.1
-0.4
-0.1
+0.5
growth on oleic acid
YNB Glucose
+0.2
+0.2
+0.1
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.7
-0.1
-0.1
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
-0.5
+0.4
-0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.1
-0.2
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+0.1
+0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+0.1
+0.1
+0.2
+0.1
remove
mRNA_1272
plot
remove
mRNA_1273
plot
remove
mRNA_1274
remove
mRNA_1275
plot
remove
mRNA_1276
plot