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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9643 and 9644 are separated by 172 nucleotides
9644 and 9645 are separated by 151 nucleotides
9645 and 9646 are separated by 606 nucleotides
9646 and 9647 are separated by 795 nucleotides
mRNA_1275: 9643 - K11426 SMYD SET and MYND domain-containing protein, at 813,494 to 815,725
9643
mRNA_1276: 9644 - K01070 frmB, ESD, fghA S-formylglutathione hydrolase, at 815,898 to 817,599
9644
mRNA_1277: 9645 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 817,751 to 818,897
9645
mRNA_1278: 9646 - KOG1414 Transcriptional activator FOSB/c-Fos and related bZIP transcription factors, at 819,504 to 821,830
9646
mRNA_1279: 9647 - BLAST family 16 carbohydrate esterase [Melampsora laric..., at 822,626 to 824,265
9647
Group
Condition
mRNA
_1275
mRNA
_1276
mRNA
_1277
mRNA
_1278
mRNA
_1279
9643
9644
9645
9646
9647
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.4
-1.7
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
-0.4
+0.0
-0.2
growth on oleic acid
YNB Oleic Acid
+0.2
+0.0
-0.7
-0.1
-0.1
auxotrophy
Dropout Complete
+0.0
+0.2
-0.2
-0.6
+0.2
growth on ricinoleic acid
YNB Glucose
+0.0
-0.0
-0.0
-0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
-0.5
+0.3
+0.3
growth on ypd
YPD
-0.1
+0.5
-0.2
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.5
-0.5
-0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.2
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
+0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
+0.5
-0.4
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
-0.0
-0.0
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.3
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.3
-0.9
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
-0.1
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.4
+0.7
-0.5
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
+0.2
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
+0.2
+0.1
-0.1
auxotrophy
YNB Glucose
-0.0
+0.3
+0.6
-0.5
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.0
-0.0
-0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.5
-0.3
+0.2
+0.2
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