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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9645 and 9646 are separated by 606 nucleotides
9646 and 9647 are separated by 795 nucleotides
9647 and 9648 are separated by 1045 nucleotides
9648 and 9649 are separated by 239 nucleotides
mRNA_1277: 9645 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 817,751 to 818,897
9645
mRNA_1278: 9646 - KOG1414 Transcriptional activator FOSB/c-Fos and related bZIP transcription factors, at 819,504 to 821,830
9646
mRNA_1279: 9647 - BLAST family 16 carbohydrate esterase [Melampsora laric..., at 822,626 to 824,265
9647
mRNA_1280: 9648 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657, at 825,311 to 827,101
9648
mRNA_1281: 9649 - HMMPfam-Peptidase M50B-like-PF13398, at 827,341 to 829,667
9649
Group
Condition
mRNA
_1277
mRNA
_1278
mRNA
_1279
mRNA
_1280
mRNA
_1281
9645
9646
9647
9648
9649
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
+0.1
+0.2
-2.6
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.3
+0.3
-1.7
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
+0.0
-1.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
+0.1
+0.2
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
-0.7
-0.1
-0.1
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.0
-0.4
+0.1
-0.4
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
+0.2
-0.2
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.4
+0.2
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.1
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.0
-0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
-0.5
-0.3
-0.2
+0.1
growth on oleic acid
YNB Glucose
-0.3
-0.0
+0.0
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.4
-0.3
-0.2
+0.1
auxotrophy
Dropout Complete
-0.2
-0.6
+0.2
+0.6
-0.1
growth on ypd
YPD
-0.2
-0.4
-0.1
+0.0
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.5
+0.0
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.0
+0.1
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
+0.4
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
-0.1
-0.2
+0.1
auxotrophy
YNB Glucose
+0.6
-0.5
+0.0
+0.3
-0.0
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