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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9646 and 9647 are separated by 795 nucleotides
9647 and 9648 are separated by 1045 nucleotides
9648 and 9649 are separated by 239 nucleotides
9649 and 9650 are separated by 63 nucleotides
mRNA_1278: 9646 - KOG1414 Transcriptional activator FOSB/c-Fos and related bZIP transcription factors, at 819,504 to 821,830
9646
mRNA_1279: 9647 - BLAST family 16 carbohydrate esterase [Melampsora laric..., at 822,626 to 824,265
9647
mRNA_1280: 9648 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657, at 825,311 to 827,101
9648
mRNA_1281: 9649 - HMMPfam-Peptidase M50B-like-PF13398, at 827,341 to 829,667
9649
mRNA_1282: 9650 - Hypothetical Protein, at 829,731 to 830,277
9650
Group
Condition
mRNA
_1278
mRNA
_1279
mRNA
_1280
mRNA
_1281
mRNA
_1282
9646
9647
9648
9649
9650
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.2
-2.6
-0.2
-2.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
-0.2
-0.6
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.0
-1.3
-0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
+0.1
+0.2
-1.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
+0.1
+0.1
-1.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.3
-1.7
-0.5
+0.8
growth on oleic acid
YNB Glucose
-0.0
+0.0
+0.1
+0.0
-0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.3
-0.3
-0.6
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.1
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.3
-0.2
+0.1
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.3
-0.2
+0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.1
-0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
-0.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.2
+0.1
-0.1
growth on ypd
YPD
-0.4
-0.1
+0.0
+0.5
+0.0
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
-0.4
-0.0
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.2
+0.3
-0.2
+0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.0
+0.1
+0.1
+0.9
auxotrophy
Dropout Complete
-0.6
+0.2
+0.6
-0.1
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.4
+0.2
-0.5
+1.0
auxotrophy
YNB Glucose
-0.5
+0.0
+0.3
-0.0
+1.3
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