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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9648 and 9649 are separated by 239 nucleotides
9649 and 9650 are separated by 63 nucleotides
9650 and 9651 are separated by 273 nucleotides
9651 and 9652 are separated by 419 nucleotides
mRNA_1280: 9648 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657, at 825,311 to 827,101
9648
mRNA_1281: 9649 - HMMPfam-Peptidase M50B-like-PF13398, at 827,341 to 829,667
9649
mRNA_1282: 9650 - Hypothetical Protein, at 829,731 to 830,277
9650
mRNA_1283: 9651 - K02883 RP-L18e, RPL18 large subunit ribosomal protein L18e, at 830,551 to 831,805
9651
mRNA_1284: 9652 - K12897 TRA2 transformer-2 protein, at 832,225 to 833,165
9652
Group
Condition
mRNA
_1280
mRNA
_1281
mRNA
_1282
mRNA
_1283
mRNA
_1284
9648
9649
9650
9651
9652
ypd buoyancy
40 hrs No Buoyancy Separation
-2.6
-0.2
-2.5
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.6
-0.9
N.D.
-1.1
facs on lipid accumulation
Sorted High BODIPY Gate
-1.7
-0.5
+0.8
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
-1.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.3
-0.2
+0.4
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-1.2
N.D.
+0.4
growth on oleic acid
YNB Glucose
+0.1
+0.0
-0.8
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.3
-0.6
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
+0.1
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
+0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
+0.5
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
-0.1
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
+0.2
N.D.
+0.3
growth on ypd
YPD
+0.0
+0.5
+0.0
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.5
+1.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.7
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
+0.7
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.4
-0.0
+0.9
N.D.
+0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
+0.9
N.D.
+0.4
auxotrophy
Dropout Complete
+0.6
-0.1
+1.0
N.D.
+0.5
auxotrophy
YNB Glucose
+0.3
-0.0
+1.3
N.D.
+0.7
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