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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9650 and 9651 are separated by 273 nucleotides
9651 and 9652 are separated by 419 nucleotides
9652 and 9653 are separated by 713 nucleotides
9653 and 9654 are separated by 244 nucleotides
mRNA_1282: 9650 - Hypothetical Protein, at 829,731 to 830,277
9650
mRNA_1283: 9651 - K02883 RP-L18e, RPL18 large subunit ribosomal protein L18e, at 830,551 to 831,805
9651
mRNA_1284: 9652 - K12897 TRA2 transformer-2 protein, at 832,225 to 833,165
9652
mRNA_1285: 9653 - Interpro Ribosomal protein 60S L18 and 50S L18e 0, at 833,879 to 834,376
9653
mRNA_1286: 9654 - HMMPfam-short chain dehydrogenase-PF00106,SUPERFAMILY--SSF51735, at 834,621 to 836,012
9654
Group
Condition
mRNA
_1282
mRNA
_1283
mRNA
_1284
mRNA
_1285
mRNA
_1286
9650
9651
9652
9653
9654
ypd buoyancy
40 hrs No Buoyancy Separation
-2.5
N.D.
-0.2
-3.5
+0.0
growth on ypd
YPD
+0.0
N.D.
-0.0
-3.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-1.1
N.D.
+0.0
-0.4
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
N.D.
-1.1
-0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-1.2
N.D.
+0.4
-0.6
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.1
-0.3
-0.9
growth on oleic acid
YNB Glucose
-0.8
N.D.
+0.2
+0.4
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.6
N.D.
+0.1
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
N.D.
-0.6
-0.7
+0.6
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
-0.1
+0.8
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
N.D.
+0.1
-0.9
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.5
-0.3
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
N.D.
+0.1
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
N.D.
-0.1
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
+0.3
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
+0.9
N.D.
+0.7
-0.4
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.0
N.D.
-0.2
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
N.D.
+0.4
-0.8
+1.1
auxotrophy
Dropout Complete
+1.0
N.D.
+0.5
+0.2
+0.0
auxotrophy
YNB Glucose
+1.3
N.D.
+0.7
+0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.9
N.D.
+0.4
+1.3
-0.1
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