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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9654 and 9655 are separated by 308 nucleotides
9655 and 9656 are separated by 721 nucleotides
9656 and 9657 are separated by 237 nucleotides
9657 and 9658 are separated by 254 nucleotides
mRNA_1286: 9654 - HMMPfam-short chain dehydrogenase-PF00106,SUPERFAMILY--SSF51735, at 834,621 to 836,012
9654
mRNA_1287: 9655 - KOG1087 Cytosolic sorting protein GGA2/TOM1, at 836,321 to 838,675
9655
mRNA_1288: 9656 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 839,397 to 840,221
9656
mRNA_1289: 9657 - K05681 ABCG2, CD338 ATP-binding cassette, subfamily G (WHITE), member 2, at 840,459 to 844,214
9657
mRNA_1290: 9658 - K03872 TCEB1 transcription elongation factor B, polypeptide 1, at 844,469 to 844,987
9658
Group
Condition
mRNA
_1286
mRNA
_1287
mRNA
_1288
mRNA
_1289
mRNA
_1290
9654
9655
9656
9657
9658
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-2.8
-0.4
+0.1
-1.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-3.1
-0.0
+0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-2.5
-0.2
+0.2
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.2
-0.3
+0.8
-2.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-1.2
+0.3
-0.0
-0.9
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.6
-0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.5
+0.2
-0.2
-2.0
growth on oleic acid
YNB Oleic Acid
-0.6
-0.7
-0.1
+0.0
+0.5
growth on ypd
YPD
-0.1
+0.3
-0.6
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.4
-0.1
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.5
-0.2
-0.0
+0.4
growth on oleic acid
YNB Glucose
-0.3
-0.1
-0.1
-0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
-0.0
+0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.7
+0.1
-0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.7
-0.0
-0.1
-0.2
auxotrophy
YNB Glucose
+0.1
+0.0
+0.1
-0.1
+0.6
growth on ricinoleic acid
YNB Glucose
-0.3
+0.3
+0.1
-0.3
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.3
+0.6
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.1
+0.7
-0.0
+0.0
auxotrophy
Dropout Complete
+0.0
-0.0
-0.1
-0.2
+1.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
+0.1
+0.4
-0.2
+0.7
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