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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9658 and 9659 are separated by 112 nucleotides
9659 and 9660 are separated by 167 nucleotides
9660 and 9661 are separated by 438 nucleotides
9661 and 9662 are separated by 831 nucleotides
mRNA_1290: 9658 - K03872 TCEB1 transcription elongation factor B, polypeptide 1, at 844,469 to 844,987
9658
mRNA_1291: 9659 - KOG3350 Uncharacterized conserved protein, at 845,100 to 846,215
9659
mRNA_1292: 9660 - K10848 ERCC4, XPF DNA excision repair protein ERCC-4, at 846,383 to 850,419
9660
mRNA_1293: 9661 - Hypothetical Protein, at 850,858 to 851,999
9661
mRNA_1294: 9662 - K20369 ERV29, SURF4 ER-derived vesicles protein, at 852,831 to 853,984
9662
Group
Condition
mRNA
_1290
mRNA
_1291
mRNA
_1292
mRNA
_1293
mRNA
_1294
9658
9659
9660
9661
9662
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.5
N.D.
-1.2
-0.1
-2.4
ypd buoyancy
40 hrs No Buoyancy Separation
-2.8
N.D.
+0.3
+0.1
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
N.D.
-0.8
-0.0
-1.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.0
N.D.
+0.1
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
-1.3
+0.2
-0.9
growth on ypd
YPD
-0.2
N.D.
+0.2
-0.5
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
-0.6
+0.2
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
-0.3
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.0
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.0
-0.4
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.2
+0.2
-0.4
auxotrophy
YNB Glucose
+0.6
N.D.
+0.1
-0.6
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.0
+0.3
+0.0
growth on oleic acid
YNB Oleic Acid
+0.5
N.D.
-0.2
+0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
N.D.
-0.1
+0.3
+0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
+0.2
-0.5
+0.0
growth on oleic acid
YNB Glucose
+0.3
N.D.
-0.0
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
-0.2
-0.2
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
N.D.
-0.2
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
+0.9
N.D.
+0.2
-0.2
+0.2
auxotrophy
Dropout Complete
+1.7
N.D.
+0.3
-0.7
+0.3
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