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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9659 and 9660 are separated by 167 nucleotides
9660 and 9661 are separated by 438 nucleotides
9661 and 9662 are separated by 831 nucleotides
9662 and 9663 are separated by 1022 nucleotides
mRNA_1291: 9659 - KOG3350 Uncharacterized conserved protein, at 845,100 to 846,215
9659
mRNA_1292: 9660 - K10848 ERCC4, XPF DNA excision repair protein ERCC-4, at 846,383 to 850,419
9660
mRNA_1293: 9661 - Hypothetical Protein, at 850,858 to 851,999
9661
mRNA_1294: 9662 - K20369 ERV29, SURF4 ER-derived vesicles protein, at 852,831 to 853,984
9662
mRNA_1295: 9663 - Hypothetical Protein, at 855,007 to 856,078
9663
Group
Condition
mRNA
_1291
mRNA
_1292
mRNA
_1293
mRNA
_1294
mRNA
_1295
9659
9660
9661
9662
9663
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.2
-0.1
-2.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.3
+0.2
-0.9
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.8
-0.0
-1.3
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.6
+0.2
-0.8
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.3
-0.4
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.1
-1.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
-0.3
-0.1
+0.1
growth on ypd
YPD
N.D.
+0.2
-0.5
-0.5
+0.5
auxotrophy
YNB Glucose
N.D.
+0.1
-0.6
-0.1
+0.3
growth on oleic acid
YNB Glucose
N.D.
-0.0
+0.1
+0.0
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.1
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.3
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.3
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.2
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
-0.4
+0.0
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.5
+0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.3
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.2
+0.2
+0.4
auxotrophy
Dropout Complete
N.D.
+0.3
-0.7
+0.3
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-0.2
+0.9
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.3
+0.7
+0.6
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