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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9662 and 9663 are separated by 1022 nucleotides
9663 and 9664 are separated by 339 nucleotides
9664 and 9665 are separated by 521 nucleotides
9665 and 9666 are separated by 302 nucleotides
mRNA_1294: 9662 - K20369 ERV29, SURF4 ER-derived vesicles protein, at 852,831 to 853,984
9662
mRNA_1295: 9663 - Hypothetical Protein, at 855,007 to 856,078
9663
mRNA_1296: 9664 - K19703 FA2H, SCS7 4-hydroxysphinganine ceramide fatty acyl 2-hydroxylase, at 856,418 to 857,945
9664
mRNA_1297: 9665 - K17292 TBCA tubulin-specific chaperone A, at 858,467 to 858,877
9665
mRNA_1298: 9666 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF13881,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SUPERFAMILY--SSF54236, at 859,180 to 859,998
9666
Group
Condition
mRNA
_1294
mRNA
_1295
mRNA
_1296
mRNA
_1297
mRNA
_1298
9662
9663
9664
9665
9666
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.4
+0.1
N.D.
-1.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
+0.2
N.D.
-1.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
+0.6
N.D.
-1.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.2
N.D.
-0.6
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
+0.4
N.D.
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.8
+0.4
N.D.
+0.1
-0.1
growth on oleic acid
YNB Glucose
+0.0
-0.4
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.0
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.4
N.D.
-0.5
-0.2
auxotrophy
YNB Glucose
-0.1
+0.3
N.D.
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.2
N.D.
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.4
N.D.
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.0
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.4
N.D.
-0.3
-0.1
auxotrophy
Dropout Complete
+0.3
+0.7
N.D.
+0.1
-0.2
growth on ypd
YPD
-0.5
+0.5
N.D.
+1.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.6
N.D.
+0.5
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
+0.6
N.D.
+0.3
-0.1
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