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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9664 and 9665 are separated by 521 nucleotides
9665 and 9666 are separated by 302 nucleotides
9666 and 9667 are separated by 510 nucleotides
9667 and 9668 overlap by 17 nucleotides
mRNA_1296: 9664 - K19703 FA2H, SCS7 4-hydroxysphinganine ceramide fatty acyl 2-hydroxylase, at 856,418 to 857,945
9664
mRNA_1297: 9665 - K17292 TBCA tubulin-specific chaperone A, at 858,467 to 858,877
9665
mRNA_1298: 9666 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF13881,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SUPERFAMILY--SSF54236, at 859,180 to 859,998
9666
mRNA_1299: 9667 - K00600 glyA, SHMT glycine hydroxymethyltransferase, at 860,509 to 862,713
9667
mRNA_1300: 9668 - BLAST polynucleotide 5-hydroxyl-kinase grc3 [Xanthophyllomy..., at 862,697 to 864,122
9668
Group
Condition
mRNA
_1296
mRNA
_1297
mRNA
_1298
mRNA
_1299
mRNA
_1300
9664
9665
9666
9667
9668
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.3
-0.2
-5.6
-1.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.5
-0.2
-5.7
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.1
-0.2
-4.5
-1.0
auxotrophy
YNB Glucose
N.D.
-0.4
-0.0
-5.8
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
-0.1
-4.8
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
+0.1
-4.6
-0.9
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
-0.1
-3.8
-0.7
auxotrophy
Dropout Complete
N.D.
+0.1
-0.2
-3.7
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.6
-0.2
-3.1
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.1
-3.8
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
-0.1
-2.5
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.0
-2.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
-0.2
-2.0
-0.6
growth on ypd
YPD
N.D.
+1.3
-0.2
-2.5
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-0.1
-0.9
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.1
-0.4
-0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.1
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.5
-0.1
+0.3
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.1
-0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.0
-0.2
+1.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.1
+0.8
-0.3
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