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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9667 and 9668 overlap by 17 nucleotides
9668 and 9669 are separated by 805 nucleotides
9669 and 9670 are separated by 296 nucleotides
9670 and 9671 are separated by 4019 nucleotides
mRNA_1299: 9667 - K00600 glyA, SHMT glycine hydroxymethyltransferase, at 860,509 to 862,713
9667
mRNA_1300: 9668 - BLAST polynucleotide 5-hydroxyl-kinase grc3 [Xanthophyllomy..., at 862,697 to 864,122
9668
mRNA_1301: 9669 - K06947 GRC3, NOL9 polynucleotide 5'-hydroxyl-kinase GRC3/NOL9, at 864,928 to 866,257
9669
mRNA_1302: 9670 - Hypothetical Protein, at 866,554 to 866,811
9670
mRNA_1303: 9671 - Hypothetical Protein, at 870,831 to 871,307
9671
Group
Condition
mRNA
_1299
mRNA
_1300
mRNA
_1301
mRNA
_1302
mRNA
_1303
9667
9668
9669
9670
9671
facs on lipid accumulation
Sorted Low BODIPY Gate
-5.6
-1.1
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-5.7
-0.4
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose
-5.8
-0.3
+0.6
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-4.6
-0.9
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-4.5
-1.0
+0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-4.8
-0.3
+0.6
N.D.
N.D.
auxotrophy
Dropout Complete
-3.7
-0.6
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-3.8
-0.7
+0.6
N.D.
N.D.
growth on oleic acid
YNB Glucose
-3.8
-0.0
+0.4
N.D.
N.D.
growth on ypd
YPD
-2.5
-0.5
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-2.5
-0.4
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-3.1
-0.3
+1.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.0
-0.6
+0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.2
-0.3
+0.6
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.9
-0.2
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
+0.0
-1.5
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.2
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.3
+0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.6
+0.8
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.4
+0.7
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.8
-0.3
+0.2
N.D.
N.D.
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