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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9669 and 9670 are separated by 296 nucleotides
9670 and 9671 are separated by 4019 nucleotides
9671 and 9672 are separated by 1628 nucleotides
9672 and 9673 are separated by 5989 nucleotides
mRNA_1301: 9669 - K06947 GRC3, NOL9 polynucleotide 5'-hydroxyl-kinase GRC3/NOL9, at 864,928 to 866,257
9669
mRNA_1302: 9670 - Hypothetical Protein, at 866,554 to 866,811
9670
mRNA_1303: 9671 - Hypothetical Protein, at 870,831 to 871,307
9671
mRNA_1304: 9672 - Hypothetical Protein, at 872,936 to 873,714
9672
mRNA_1305: 9673 - Hypothetical Protein, at 879,704 to 880,783
9673
Group
Condition
mRNA
_1301
mRNA
_1302
mRNA
_1303
mRNA
_1304
mRNA
_1305
9669
9670
9671
9672
9673
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
N.D.
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
N.D.
-0.6
+0.0
auxotrophy
Dropout Complete
-0.0
N.D.
N.D.
-0.6
-0.4
growth on ypd
YPD
+0.3
N.D.
N.D.
-0.4
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
N.D.
-0.6
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
N.D.
-0.7
-0.3
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
N.D.
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
N.D.
N.D.
-0.8
-0.1
growth on ricinoleic acid
YNB Glucose
+0.6
N.D.
N.D.
-0.5
-0.2
auxotrophy
YNB Glucose
+0.6
N.D.
N.D.
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.6
N.D.
N.D.
-0.4
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
N.D.
N.D.
-0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
N.D.
N.D.
-0.2
-0.1
growth on oleic acid
YNB Glucose
+0.4
N.D.
N.D.
+0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
N.D.
+0.3
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
N.D.
N.D.
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
N.D.
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
N.D.
N.D.
-0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.6
N.D.
N.D.
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.2
N.D.
N.D.
+0.1
-0.1
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