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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9683 and 9684 are separated by 103 nucleotides
9684 and 9685 are separated by 1478 nucleotides
9685 and 9686 are separated by 2815 nucleotides
9686 and 9687 are separated by 539 nucleotides
mRNA_1315: 9683 - K12813 DHX16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, at 903,446 to 907,323
9683
mRNA_1316: 9684 - KOG4711 Predicted membrane protein, at 907,427 to 911,419
9684
mRNA_1317: 9685 - K10586 BIRC6, BRUCE baculoviral IAP repeat-containing protein 6 (apollon), at 912,898 to 915,094
9685
mRNA_1318: 9686 - KOG1773 Stress responsive protein, at 917,910 to 918,381
9686
mRNA_1319: 9687 - KOG0404 Thioredoxin reductase, at 918,921 to 919,455
9687
Group
Condition
mRNA
_1315
mRNA
_1316
mRNA
_1317
mRNA
_1318
mRNA
_1319
9683
9684
9685
9686
9687
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-2.2
+0.1
N.D.
-1.4
auxotrophy
Dropout Complete
N.D.
+0.1
-0.4
N.D.
-1.2
auxotrophy
YNB Glucose
N.D.
+0.0
-0.3
N.D.
-1.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.2
N.D.
-1.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.2
N.D.
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
-0.8
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.3
N.D.
-1.4
growth on ypd
YPD
N.D.
+0.1
-0.6
N.D.
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
+0.5
N.D.
-1.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.2
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
+0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.3
N.D.
+0.8
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
-0.2
N.D.
+0.7
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.0
N.D.
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.1
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.3
N.D.
+1.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.5
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
-0.4
N.D.
+1.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.4
N.D.
+1.3
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