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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9689 and 9690 are separated by 403 nucleotides
9690 and 9691 are separated by 74 nucleotides
9691 and 9692 are separated by 526 nucleotides
9692 and 9693 are separated by 1058 nucleotides
mRNA_1321: 9689 - K01687 ilvD dihydroxy-acid dehydratase, at 924,621 to 927,018
9689
mRNA_1322: 9690 - K11662 ACTR6, ARP6 actin-related protein 6, at 927,422 to 929,610
9690
mRNA_1323: 9691 - Hypothetical Protein, at 929,685 to 931,310
9691
mRNA_1324: 9692 - Hypothetical Protein, at 931,837 to 933,855
9692
mRNA_1325: 9693 - KOG1960 Predicted RNA-binding protein, contains KH domains, at 934,914 to 938,027
9693
Group
Condition
mRNA
_1321
mRNA
_1322
mRNA
_1323
mRNA
_1324
mRNA
_1325
9689
9690
9691
9692
9693
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
N.D.
-0.9
-1.2
-0.4
auxotrophy
Dropout Complete
-1.0
N.D.
-0.2
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.3
-0.5
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-1.0
N.D.
+0.2
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
N.D.
+0.1
-0.1
-0.2
auxotrophy
YNB Glucose
-0.2
N.D.
-0.4
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
-0.9
+0.2
-0.5
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
N.D.
-0.2
-0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.4
N.D.
+0.3
-0.1
-0.2
growth on ypd
YPD
-0.7
N.D.
+0.4
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
N.D.
+0.1
-0.4
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
+0.0
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
-0.3
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
-0.3
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
N.D.
+0.1
-0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
N.D.
+0.2
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
-0.3
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.1
N.D.
-0.0
+0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
N.D.
+0.1
+0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.7
N.D.
+0.2
+0.1
+0.3
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