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Fitness for 4 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9694 and 9695 are separated by 776 nucleotides
9695 and 9696 are separated by 325 nucleotides
9696 and 9697 are separated by 333 nucleotides
mRNA_1326: 9694 - KOG1239 Inner membrane protein translocase involved in respiratory chain assembly, at 227 to 1,696
9694
mRNA_1327: 9695 - K14684 SLC25A23S solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41, at 2,473 to 5,541
9695
mRNA_1328: 9696 - SUPERFAMILY--SSF82708, at 5,867 to 7,721
9696
mRNA_1329: 9697 - HMMPfam-SUZ domain-PF12752,ProSiteProfiles-SUZ domain profile.-PS51673, at 8,055 to 8,960
9697
Group
Condition
mRNA
_1326
mRNA
_1327
mRNA
_1328
mRNA
_1329
9694
9695
9696
9697
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.4
-0.7
-0.2
+0.6
growth on ricinoleic acid
YNB Glucose
-1.9
-0.7
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.1
-0.7
+0.1
+0.4
auxotrophy
YNB Glucose
-1.6
-0.4
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.4
-0.2
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.7
+0.2
+0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.9
-0.0
-0.3
-0.1
growth on oleic acid
YNB Oleic Acid
-1.2
-0.0
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.9
-0.1
+0.1
-0.3
auxotrophy
Dropout Complete
-1.3
+0.1
+0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-1.9
+0.2
+0.4
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.9
-0.3
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
+0.1
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+0.2
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.6
+0.1
+0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.5
+0.5
+0.5
-0.2
growth on oleic acid
YNB Glucose
-1.1
+0.1
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
-0.0
+0.0
growth on ypd
YPD
+0.4
+0.3
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.9
+0.3
+0.3
-0.3
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