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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9695 and 9696 are separated by 325 nucleotides
9696 and 9697 are separated by 333 nucleotides
9697 and 9698 are separated by 273 nucleotides
9698 and 9699 are separated by 362 nucleotides
mRNA_1327: 9695 - K14684 SLC25A23S solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41, at 2,473 to 5,541
9695
mRNA_1328: 9696 - SUPERFAMILY--SSF82708, at 5,867 to 7,721
9696
mRNA_1329: 9697 - HMMPfam-SUZ domain-PF12752,ProSiteProfiles-SUZ domain profile.-PS51673, at 8,055 to 8,960
9697
mRNA_1330: 9698 - HMMPfam-LCCL domain-PF03815,ProSiteProfiles-LCCL domain profile.-PS50820,SUPERFAMILY--SSF69848, at 9,234 to 11,606
9698
mRNA_1331: 9699 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 11,969 to 15,219
9699
Group
Condition
mRNA
_1327
mRNA
_1328
mRNA
_1329
mRNA
_1330
mRNA
_1331
9695
9696
9697
9698
9699
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.6
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.3
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose
-0.4
-0.1
+0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.7
-0.1
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
-0.1
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.2
+0.6
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
-0.2
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
+0.0
-0.1
N.D.
auxotrophy
Dropout Complete
+0.1
+0.1
+0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
-0.3
+0.4
N.D.
growth on ypd
YPD
+0.3
+0.1
-0.1
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
-0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.1
+0.4
+0.4
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.2
+0.1
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.5
-0.2
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.3
-0.3
+0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.4
+0.3
+0.3
N.D.
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