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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9696 and 9697 are separated by 333 nucleotides
9697 and 9698 are separated by 273 nucleotides
9698 and 9699 are separated by 362 nucleotides
9699 and 9700 are separated by 562 nucleotides
mRNA_1328: 9696 - SUPERFAMILY--SSF82708, at 5,867 to 7,721
9696
mRNA_1329: 9697 - HMMPfam-SUZ domain-PF12752,ProSiteProfiles-SUZ domain profile.-PS51673, at 8,055 to 8,960
9697
mRNA_1330: 9698 - HMMPfam-LCCL domain-PF03815,ProSiteProfiles-LCCL domain profile.-PS50820,SUPERFAMILY--SSF69848, at 9,234 to 11,606
9698
mRNA_1331: 9699 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 11,969 to 15,219
9699
mRNA_1332: 9700 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 15,782 to 19,108
9700
Group
Condition
mRNA
_1328
mRNA
_1329
mRNA
_1330
mRNA
_1331
mRNA
_1332
9696
9697
9698
9699
9700
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.1
-0.1
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
-0.1
N.D.
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
+0.1
N.D.
-0.2
growth on ypd
YPD
+0.1
-0.1
-0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.0
-0.1
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
+0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.0
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.2
-0.0
N.D.
-0.1
auxotrophy
Dropout Complete
+0.1
+0.0
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
-0.1
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.2
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose
-0.1
+0.1
+0.2
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.2
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
+0.2
N.D.
-0.4
growth on oleic acid
YNB Glucose
+0.2
+0.1
-0.0
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
+0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
+0.4
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.6
+0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.4
+0.4
N.D.
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.3
+0.4
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.3
+0.3
N.D.
-0.1
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