Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 9699 and 9700 are separated by 562 nucleotides9700 and 9701 are separated by 2171 nucleotides9701 and 9702 are separated by 267 nucleotides9702 and 9703 are separated by 291 nucleotides mRNA_1331: 9699 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 11,969 to 15,219 9699 mRNA_1332: 9700 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 15,782 to 19,108 9700 mRNA_1333: 9701 - K08286 E2.7.11.- protein-serine/threonine kinase, at 21,280 to 24,099 9701 mRNA_1334: 9702 - HMMPfam-RNA polymerase II transcription elongation factor-PF09816, at 24,367 to 26,303 9702 mRNA_1335: 9703 - HMMPfam-Cysteine-rich TM module stress tolerance-PF12734, at 26,595 to 27,216 9703
Group Condition mRNA_1331 mRNA_1332 mRNA_1333 mRNA_1334 mRNA_1335
9699 9700 9701 9702 9703
growth on ricinoleic acid YNB Ricinoleic Acid N.D. -0.5 N.D. -0.6 +0.0
growth on oleic acid YNB Oleic Acid N.D. -0.7 N.D. -0.4 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. -0.2 N.D. -0.6 -0.1
auxotrophy YNB Glucose 75mM Methionine N.D. -0.4 N.D. -0.3 -0.2
growth on ypd YPD N.D. -0.2 N.D. -0.3 -0.3
auxotrophy YNB Glucose 75mM Arginine N.D. -0.3 N.D. +0.1 -0.3
facs on lipid accumulation Sorted No BODIPY Gate N.D. -0.1 N.D. -0.4 -0.1
auxotrophy YNB Glucose N.D. -0.2 N.D. -0.3 -0.1
growth on ricinoleic acid YNB Glucose N.D. -0.4 N.D. +0.1 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -0.1 N.D. -0.2 -0.2
ypd buoyancy 40 hrs Low Buoyancy N.D. -0.2 N.D. -0.0 -0.2
facs on lipid accumulation Sorted High BODIPY Gate N.D. -0.1 N.D. -0.4 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. -0.2 N.D. -0.1 +0.1
auxotrophy Dropout Complete N.D. -0.1 N.D. -0.2 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. -0.1 N.D. +0.2 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation N.D. -0.1 N.D. +0.2 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. -0.0 N.D. +0.1 +0.1
growth on oleic acid YNB Glucose N.D. -0.2 N.D. -0.0 +0.4
ypd buoyancy 40 hrs Median Buoyancy N.D. +0.3 N.D. +0.2 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. -0.0 N.D. +0.3 +0.2
ypd buoyancy 40 hrs High Buoyancy N.D. +0.4 N.D. -0.0 +0.1
remove
mRNA_1331
plot		 remove
mRNA_1332
plot		 remove
mRNA_1333		 remove
mRNA_1334
plot		 remove
mRNA_1335
plot