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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9702 and 9703 are separated by 291 nucleotides
9703 and 9704 are separated by 310 nucleotides
9704 and 9705 are separated by 99 nucleotides
9705 and 9706 are separated by 469 nucleotides
mRNA_1334: 9702 - HMMPfam-RNA polymerase II transcription elongation factor-PF09816, at 24,367 to 26,303
9702
mRNA_1335: 9703 - HMMPfam-Cysteine-rich TM module stress tolerance-PF12734, at 26,595 to 27,216
9703
mRNA_1336: 9704 - K01850 E5.4.99.5 chorismate mutase, at 27,527 to 28,944
9704
mRNA_1337: 9705 - K17732 PMPCB, MAS1 mitochondrial-processing peptidase subunit beta, at 29,044 to 31,153
9705
mRNA_1338: 9706 - SUPERFAMILY--SSF52047, at 31,623 to 33,145
9706
Group
Condition
mRNA
_1334
mRNA
_1335
mRNA
_1336
mRNA
_1337
mRNA
_1338
9702
9703
9704
9705
9706
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.2
N.D.
N.D.
-0.4
growth on ypd
YPD
-0.3
-0.3
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
N.D.
N.D.
-0.4
auxotrophy
YNB Glucose
-0.3
-0.1
N.D.
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
N.D.
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.1
N.D.
N.D.
+0.1
auxotrophy
Dropout Complete
-0.2
+0.1
N.D.
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
N.D.
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.0
N.D.
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.0
N.D.
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
-0.4
+0.1
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.1
N.D.
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.1
N.D.
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.1
N.D.
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
N.D.
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.2
N.D.
N.D.
+0.7
growth on oleic acid
YNB Glucose
-0.0
+0.4
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.2
N.D.
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
N.D.
N.D.
+0.6
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