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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9704 and 9705 are separated by 99 nucleotides
9705 and 9706 are separated by 469 nucleotides
9706 and 9707 are separated by 408 nucleotides
9707 and 9708 are separated by 120 nucleotides
mRNA_1336: 9704 - K01850 E5.4.99.5 chorismate mutase, at 27,527 to 28,944
9704
mRNA_1337: 9705 - K17732 PMPCB, MAS1 mitochondrial-processing peptidase subunit beta, at 29,044 to 31,153
9705
mRNA_1338: 9706 - SUPERFAMILY--SSF52047, at 31,623 to 33,145
9706
mRNA_1339: 9707 - Hypothetical Protein, at 33,554 to 34,142
9707
mRNA_1340: 9708 - KOG3968 Atrazine chlorohydrolase/guanine deaminase, at 34,263 to 36,045
9708
Group
Condition
mRNA
_1336
mRNA
_1337
mRNA
_1338
mRNA
_1339
mRNA
_1340
9704
9705
9706
9707
9708
auxotrophy
Dropout Complete
N.D.
N.D.
-0.3
-0.0
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.4
-0.1
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.3
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.3
-0.1
-0.0
growth on ypd
YPD
N.D.
N.D.
-0.2
-0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.3
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.4
+0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.6
-0.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.3
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
+0.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.1
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
+0.0
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.2
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.6
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.1
+0.3
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.2
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
-0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.7
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.3
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.3
+0.4
-0.0
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