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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9711 and 9712 are separated by 239 nucleotides
9712 and 9713 are separated by 119 nucleotides
9713 and 9714 are separated by 265 nucleotides
9714 and 9715 are separated by 1383 nucleotides
mRNA_1343: 9711 - K00698 CHS1 chitin synthase, at 40,770 to 45,014
9711
mRNA_1344: 9712 - K06063 SNW1, SKIIP, SKIP SNW domain-containing protein 1, at 45,254 to 47,593
9712
mRNA_1345: 9713 - KOG2533 Permease of the major facilitator superfamily, at 47,713 to 50,221
9713
mRNA_1346: 9714 - Hypothetical Protein, at 50,487 to 51,327
9714
mRNA_1347: 9715 - Hypothetical Protein, at 52,711 to 53,943
9715
Group
Condition
mRNA
_1343
mRNA
_1344
mRNA
_1345
mRNA
_1346
mRNA
_1347
9711
9712
9713
9714
9715
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.1
-0.8
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.2
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.2
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.1
-0.5
-0.1
auxotrophy
Dropout Complete
-0.1
N.D.
-0.0
+0.0
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.1
-0.1
-0.2
growth on ypd
YPD
+0.2
N.D.
+0.1
-0.3
-0.2
auxotrophy
YNB Glucose
-0.1
N.D.
-0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
+0.1
+0.4
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
+0.2
+0.5
-0.6
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.2
+0.2
+0.0
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
-0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
+0.0
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.0
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
+0.2
-0.4
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
+0.1
+0.1
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
+0.2
+0.7
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
N.D.
+0.3
-0.0
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
+0.4
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.2
+0.5
+0.4
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