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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9712 and 9713 are separated by 119 nucleotides
9713 and 9714 are separated by 265 nucleotides
9714 and 9715 are separated by 1383 nucleotides
9715 and 9716 are separated by 1024 nucleotides
mRNA_1344: 9712 - K06063 SNW1, SKIIP, SKIP SNW domain-containing protein 1, at 45,254 to 47,593
9712
mRNA_1345: 9713 - KOG2533 Permease of the major facilitator superfamily, at 47,713 to 50,221
9713
mRNA_1346: 9714 - Hypothetical Protein, at 50,487 to 51,327
9714
mRNA_1347: 9715 - Hypothetical Protein, at 52,711 to 53,943
9715
mRNA_1348: 9716 - SUPERFAMILY--SSF52047, at 54,968 to 55,797
9716
Group
Condition
mRNA
_1344
mRNA
_1345
mRNA
_1346
mRNA
_1347
mRNA
_1348
9712
9713
9714
9715
9716
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.5
-0.1
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.8
-0.5
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.4
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.5
-0.2
+0.3
growth on ypd
YPD
N.D.
+0.1
-0.3
-0.2
+0.2
auxotrophy
Dropout Complete
N.D.
-0.0
+0.0
-0.2
+0.3
growth on oleic acid
YNB Glucose
N.D.
-0.2
+0.2
+0.0
+0.1
auxotrophy
YNB Glucose
N.D.
-0.1
-0.1
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
+0.5
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
+0.1
+0.3
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.1
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
+0.3
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.1
+0.5
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.4
-0.4
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.1
+0.2
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.4
+0.7
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-0.0
+0.7
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.1
+0.3
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.5
+0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.4
+0.3
+0.2
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.7
+0.0
+0.5
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