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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9715 and 9716 are separated by 1024 nucleotides
9716 and 9717 are separated by 394 nucleotides
9717 and 9718 are separated by 238 nucleotides
9718 and 9719 are separated by 440 nucleotides
mRNA_1347: 9715 - Hypothetical Protein, at 52,711 to 53,943
9715
mRNA_1348: 9716 - SUPERFAMILY--SSF52047, at 54,968 to 55,797
9716
mRNA_1349: 9717 - K12852 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component, at 56,192 to 59,943
9717
mRNA_1350: 9718 - KOG3376 Uncharacterized conserved protein, at 60,182 to 60,785
9718
mRNA_1351: 9719 - Hypothetical Protein, at 61,226 to 65,910
9719
Group
Condition
mRNA
_1347
mRNA
_1348
mRNA
_1349
mRNA
_1350
mRNA
_1351
9715
9716
9717
9718
9719
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.1
N.D.
-0.7
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.2
N.D.
-0.6
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
+0.1
N.D.
-1.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.5
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.2
N.D.
-0.7
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.3
N.D.
-0.2
+0.1
auxotrophy
YNB Glucose
+0.2
+0.2
N.D.
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.2
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.1
N.D.
-0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.4
N.D.
+0.6
-0.2
auxotrophy
Dropout Complete
-0.2
+0.3
N.D.
+0.3
+0.1
growth on ypd
YPD
-0.2
+0.2
N.D.
+0.5
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.5
N.D.
-0.1
+0.0
growth on ricinoleic acid
YNB Glucose
-0.2
+0.5
N.D.
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
N.D.
+0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.5
N.D.
+0.4
-0.2
growth on oleic acid
YNB Glucose
+0.0
+0.1
N.D.
+0.7
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.4
N.D.
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.4
N.D.
+0.7
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
+0.3
N.D.
+1.1
-0.1
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