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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9717 and 9718 are separated by 238 nucleotides
9718 and 9719 are separated by 440 nucleotides
9719 and 9720 are separated by 560 nucleotides
9720 and 9721 are separated by 879 nucleotides
mRNA_1349: 9717 - K12852 EFTUD2 116 kDa U5 small nuclear ribonucleoprotein component, at 56,192 to 59,943
9717
mRNA_1350: 9718 - KOG3376 Uncharacterized conserved protein, at 60,182 to 60,785
9718
mRNA_1351: 9719 - Hypothetical Protein, at 61,226 to 65,910
9719
mRNA_1352: 9720 - Hypothetical Protein, at 66,471 to 67,100
9720
mRNA_1353: 9721 - HMMPfam-Starch binding domain-PF00686,ProSiteProfiles-CBM20 (carbohydrate binding type-20) domain profile.-PS51166,SMART-Starch binding domain-SM01065,SUPERFAMILY--SSF49452, at 67,980 to 69,503
9721
Group
Condition
mRNA
_1349
mRNA
_1350
mRNA
_1351
mRNA
_1352
mRNA
_1353
9717
9718
9719
9720
9721
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
+0.2
-0.3
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.3
-0.0
+0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
-0.0
-0.4
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.7
-0.0
-0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
+0.0
-0.2
-0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.7
-0.1
+0.2
-0.1
auxotrophy
YNB Glucose
N.D.
-0.4
+0.2
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.1
-0.4
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
-0.0
-0.5
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
-0.2
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
-0.2
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.2
-0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.6
-0.2
-0.0
-0.3
growth on ypd
YPD
N.D.
+0.5
+0.1
-0.5
+0.3
auxotrophy
Dropout Complete
N.D.
+0.3
+0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
+0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
+0.2
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.7
-0.0
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.7
+0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
+0.3
+0.1
+0.5
growth on oleic acid
YNB Oleic Acid
N.D.
+1.1
-0.1
+0.4
+0.0
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