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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9720 and 9721 are separated by 879 nucleotides
9721 and 9722 are separated by 52 nucleotides
9722 and 9723 are separated by 995 nucleotides
9723 and 9724 are separated by 1196 nucleotides
mRNA_1352: 9720 - Hypothetical Protein, at 66,471 to 67,100
9720
mRNA_1353: 9721 - HMMPfam-Starch binding domain-PF00686,ProSiteProfiles-CBM20 (carbohydrate binding type-20) domain profile.-PS51166,SMART-Starch binding domain-SM01065,SUPERFAMILY--SSF49452, at 67,980 to 69,503
9721
mRNA_1354: 9722 - Hypothetical Protein, at 69,556 to 71,202
9722
mRNA_1355: 9723 - SUPERFAMILY--SSF50685, at 72,198 to 73,021
9723
mRNA_1356: 9724 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 74,218 to 78,285
9724
Group
Condition
mRNA
_1352
mRNA
_1353
mRNA
_1354
mRNA
_1355
mRNA
_1356
9720
9721
9722
9723
9724
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.3
-0.2
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.8
+0.0
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.2
-0.0
+0.1
-0.1
growth on ypd
YPD
-0.5
+0.3
-0.0
-0.0
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.6
+0.3
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.0
+0.0
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.0
-0.1
+0.0
+0.2
growth on ricinoleic acid
YNB Glucose
-0.5
-0.2
+0.2
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.4
+0.0
+0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
-0.0
+0.1
-0.1
auxotrophy
YNB Glucose
-0.3
+0.0
+0.0
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
+0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.3
+0.0
+0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
-0.0
+0.2
+0.1
auxotrophy
Dropout Complete
+0.1
-0.0
-0.0
+0.0
+0.2
growth on oleic acid
YNB Oleic Acid
+0.4
+0.0
-0.0
+0.1
+0.0
growth on oleic acid
YNB Glucose
+0.1
+0.0
+0.1
+0.4
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
-0.0
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
-0.1
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.5
-0.1
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
-0.0
+0.6
+0.4
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