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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9721 and 9722 are separated by 52 nucleotides
9722 and 9723 are separated by 995 nucleotides
9723 and 9724 are separated by 1196 nucleotides
9724 and 9725 are separated by 1229 nucleotides
mRNA_1353: 9721 - HMMPfam-Starch binding domain-PF00686,ProSiteProfiles-CBM20 (carbohydrate binding type-20) domain profile.-PS51166,SMART-Starch binding domain-SM01065,SUPERFAMILY--SSF49452, at 67,980 to 69,503
9721
mRNA_1354: 9722 - Hypothetical Protein, at 69,556 to 71,202
9722
mRNA_1355: 9723 - SUPERFAMILY--SSF50685, at 72,198 to 73,021
9723
mRNA_1356: 9724 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 74,218 to 78,285
9724
mRNA_1357: 9725 - BLAST ATP-citrate synthase [Microbotryum lychnidis-dioicae ..., at 79,515 to 80,146
9725
Group
Condition
mRNA
_1353
mRNA
_1354
mRNA
_1355
mRNA
_1356
mRNA
_1357
9721
9722
9723
9724
9725
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.0
-0.1
+0.3
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
-0.1
+0.0
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.0
-0.3
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.0
+0.1
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.3
+0.1
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
+0.0
+0.2
-0.1
auxotrophy
YNB Glucose
+0.0
+0.0
+0.1
+0.1
-0.2
growth on ypd
YPD
+0.3
-0.0
-0.0
-0.3
+0.1
auxotrophy
Dropout Complete
-0.0
-0.0
+0.0
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.0
+0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.2
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.0
+0.4
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
-0.0
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.0
+0.3
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.1
+0.4
+0.2
-0.5
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
+0.1
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.0
+0.2
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
+0.2
+0.3
+0.2
growth on oleic acid
YNB Glucose
+0.0
+0.1
+0.4
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
+0.6
+0.4
+0.4
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