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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9723 and 9724 are separated by 1196 nucleotides
9724 and 9725 are separated by 1229 nucleotides
9725 and 9726 are separated by 198 nucleotides
9726 and 9727 are separated by 1009 nucleotides
mRNA_1355: 9723 - SUPERFAMILY--SSF50685, at 72,198 to 73,021
9723
mRNA_1356: 9724 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 74,218 to 78,285
9724
mRNA_1357: 9725 - BLAST ATP-citrate synthase [Microbotryum lychnidis-dioicae ..., at 79,515 to 80,146
9725
mRNA_1358: 9726 - K01648 ACLY ATP citrate (pro-S)-lyase, at 80,345 to 84,761
9726
mRNA_1359: 9727 - K06018 PPN1 endopolyphosphatase, at 85,771 to 88,302
9727
Group
Condition
mRNA
_1355
mRNA
_1356
mRNA
_1357
mRNA
_1358
mRNA
_1359
9723
9724
9725
9726
9727
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.1
-0.3
N.D.
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
-0.3
N.D.
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
+0.2
N.D.
-1.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
-0.3
N.D.
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.3
-0.6
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
+0.0
N.D.
-0.9
auxotrophy
Dropout Complete
+0.0
+0.2
-0.2
N.D.
-0.9
auxotrophy
YNB Glucose
+0.1
+0.1
-0.2
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
-0.1
N.D.
-0.5
growth on ypd
YPD
-0.0
-0.3
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.1
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
-0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
+0.2
N.D.
-1.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
+0.1
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
+0.4
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.4
-0.0
+0.4
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.1
+0.3
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.1
+0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
+0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.2
-0.5
N.D.
+1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+0.4
+0.4
N.D.
+0.5
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