Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 9724 and 9725 are separated by 1229 nucleotides9725 and 9726 are separated by 198 nucleotides9726 and 9727 are separated by 1009 nucleotides9727 and 9728 are separated by 319 nucleotides mRNA_1356: 9724 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 74,218 to 78,285 9724 mRNA_1357: 9725 - BLAST ATP-citrate synthase [Microbotryum lychnidis-dioicae ..., at 79,515 to 80,146 9725 mRNA_1358: 9726 - K01648 ACLY ATP citrate (pro-S)-lyase, at 80,345 to 84,761 9726 mRNA_1359: 9727 - K06018 PPN1 endopolyphosphatase, at 85,771 to 88,302 9727 mRNA_1360: 9728 - K01054 MGLL acylglycerol lipase, at 88,622 to 90,157 9728
Group Condition mRNA_1356 mRNA_1357 mRNA_1358 mRNA_1359 mRNA_1360
9724 9725 9726 9727 9728
facs on lipid accumulation Sorted High BODIPY Gate -0.2 +0.2 N.D. -1.4 -0.3
facs on lipid accumulation Sorted No BODIPY Gate -0.1 -0.3 N.D. -1.3 +0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.3 N.D. -0.9 -0.2
ypd buoyancy 40 hrs Low Buoyancy +0.0 -0.3 N.D. -0.6 -0.1
auxotrophy Dropout Complete +0.2 -0.2 N.D. -0.9 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 +0.2 N.D. -1.0 -0.4
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.0 N.D. -0.9 +0.0
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 -0.6 N.D. -0.5 +0.2
auxotrophy YNB Glucose +0.1 -0.2 N.D. -0.5 +0.0
auxotrophy YNB Glucose 75mM Arginine +0.2 -0.1 N.D. -0.5 -0.1
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.1 N.D. -0.4 -0.1
growth on ricinoleic acid YNB Glucose +0.1 -0.1 N.D. -0.4 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 +0.3 N.D. -0.0 -0.8
growth on oleic acid YNB Oleic Acid +0.0 +0.4 N.D. -0.2 -0.6
growth on ypd YPD -0.3 +0.1 N.D. -0.2 +0.2
growth on oleic acid YNB Glucose -0.0 +0.4 N.D. -0.3 -0.1
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.1 N.D. -0.4 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 +0.4 N.D. +0.1 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 +0.3 N.D. +0.3 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 -0.5 N.D. +1.1 +0.7
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.4 +0.4 N.D. +0.5 +0.3
remove
mRNA_1356
plot
remove
mRNA_1357
plot
remove
mRNA_1358
remove
mRNA_1359
plot
remove
mRNA_1360
plot